Supplementary Material
Automatically inferring causal networks linking growth factor stimuli to functional cell state changes
Carito Guziolowski12, Aristotelis Kittas 12, Florian Dittmann12 and Niels Grabe12
1 Medical Informatics Department, Institute of Medical Biometry and Informatics, University Hospital Heidelberg, Im Neuenheimer Feld 305 and 2 Hamamatsu Tissue Imaging and Analysis Center (TIGA), BIOQUANT, University Heidelberg, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany
Supplementary Figures
Cytoscape files (v2.8.1)
Network of early events- Cytoscape session file (EarlyEvents.cys)
- SIF file (EarlyEventsNet.sif)
- Node attributes (nodeAt.zip)
- Edge attributes (edgeAt.zip)
- Vizmap property file (netView.props)
Union network of all time points
- Cytoscape session file (allTimePoints.cys)
- SIF file (allTimePoints.sif)
- Node attributes (nodeAt.zip)
- Edge attributes (edgeAt.zip)
- Vizmap property file (netView.props)
Visualization file: Upload the Vizmap property file into Cytoscape in order to obtain the same visualization effects as in the figures of the article.
PIDXMLtoCytoscape converter (Java)
- Java executable file (PidFileConverter.jar)
- Jar file with sources. (PidFileConverter_src.jar)
- Usage instructions
Please Note: For troubleshooting regarding the usage of the PID converter java program please contact: carito.guziolowski at bioquant.uni-heidelberg.de